miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|296570488|gb|GW956222.1|GW956222 AGCACACTCCTTCTTTCTTACTCATTCTCAACTGTATCTTCGTCTTCTCTCTTTCTTACCAGAATCACTTCTCGTTTCTC
TTTCGCTGCACCGCTTCCTCTGCGTTCCAACCACACCAAGCACATGGCTCACACTCTCGCTCGCGCCACTGCCACTCTCG
GCCTTACTCACCCTTCCAACACCGATTCCCCCAAGATCTCTTTTGCTGCTAAGGAGGTTGATGTCACTGAATGGAACGGA
GACATCCTTGCAGTGGGTGTTACTGAGAAAGACTTGGCTAAGGATGGGAAATCGGGATTTGAGAATCCGATTTTGAAAAA
GATTGACTCCAAGTTGGGTGGTTTGTTAGCTGAAGCGTCCTCTGAAGAGGATTTCTCAGGCAAAGCTGGCCAATCAACGG
TTCTTAGAATTACCGGCCTCGGGTCGAAGAGGATTGGCTTGATTGGGCTTGGACAGACCACTTCCACTACCGCAGCTTTT
AAGACTTTTGGTGAGGCTGTTGCAGCTGCTGCAAAGTCTGCTCAAGCAAGCAATGTAGCCGTTGTTCTCGCCTCTTCTGA
AGGACTTTCTAAAGAAACAAAGCTCAGCACTGCTTATGCAATCGCCACTGGGACTGCGCTGGGAATATTTGA




Most similar to sp|Q944P7|AMPL3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q944P7|AMPL3_ARATH Leucine aminopeptidase 3, chloroplastic
           OS=Arabidopsis thaliana GN=At4g30920 PE=2 SV=2
          Length = 583

 Score =  187 bits (476), Expect = 4e-47
 Identities = 96/152 (63%), Positives = 116/152 (76%)
 Frame = +1

Query: 175 SNTDSPKISFAAKEVDVTEWNGDILAVGVTEKDLAKDGKSGFENPILKKIDSKLGGLLAE 354
           ++ D PKISF+ KE+DVTEW GDILAVGVTEKD+AKD  S FENPILKK+D+ LGGLLA+
Sbjct: 72  NSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDVNSKFENPILKKLDAHLGGLLAD 131

Query: 355 ASSEEDFSGKAGQSTVLRITGLGSKRIGLIGLGQTTSTTAAFKTFGEXXXXXXXXXXXXX 534
            SSEEDFSGK GQSTVLR+ GLGSKR+GLIGLG++ ST +AF++ GE             
Sbjct: 132 VSSEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASS 191

Query: 535 XXXXLASSEGLSKETKLSTAYAIATGTALGIF 630
               LASSE +S E+KL +A AIA+GT LG+F
Sbjct: 192 VAVVLASSESVSNESKLCSASAIASGTVLGLF 223